Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ycjXHypothetical protein. (491 aa)    
Predicted Functional Partners:
ycjF
Hypothetical protein.
 
  
 0.992
BVIR_983
Histidine phosphatase superfamily (branch 1).
       0.832
mepA_1
Penicillin-insensitive murein endopeptidase precursor.
  
     0.661
uspG
Universal stress protein G.
 
     0.661
BVIR_3060
Invasion associated locus B (IalB) protein.
  
     0.558
puuB_2
Gamma-glutamylputrescine oxidoreductase.
       0.553
BVIR_2564
Lysophospholipase L2.
  
     0.540
BVIR_96
Peptidase M15.
  
     0.490
BVIR_2690
Hypothetical protein.
  
     0.473
BVIR_1772
Hypothetical protein.
  
     0.462
Your Current Organism:
Blastochloris viridis
NCBI taxonomy Id: 1079
Other names: ATCC 19567, B. viridis, CCUG 30818, CCUG 7830, DSM 133, LMG 4321, LMG:4321, NBRC 102659, Rhodopseudomonas viridis, strain G. Drews F
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