STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
puuB_2Gamma-glutamylputrescine oxidoreductase. (453 aa)    
Predicted Functional Partners:
puuA_1
Gamma-glutamylputrescine synthetase PuuA; Belongs to the glutamine synthetase family.
 
  
 0.809
BVIR_983
Histidine phosphatase superfamily (branch 1).
       0.574
ycjF
Hypothetical protein.
       0.553
ycjX
Hypothetical protein.
       0.553
BVIR_2027
Hydrogen cyanide synthase subunit HcnB.
 
 
 0.544
BVIR_2715
Omega-amino acid--pyruvate aminotransferase; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family.
 
  
 0.542
gcvT
Aminomethyltransferase.
  
 
 0.531
speB
Agmatinase; Belongs to the arginase family.
 
  
 0.487
potF_1
Putrescine-binding periplasmic protein precursor; Required for the activity of the bacterial periplasmic transport system of putrescine; Belongs to the bacterial solute-binding protein PotD/PotF family.
 
   
 0.481
soxB
Sarcosine oxidase subunit beta.
 
     0.470
Your Current Organism:
Blastochloris viridis
NCBI taxonomy Id: 1079
Other names: ATCC 19567, B. viridis, CCUG 30818, CCUG 7830, DSM 133, LMG 4321, LMG:4321, NBRC 102659, Rhodopseudomonas viridis, strain G. Drews F
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