STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFP24787.1ABC-2 type transport system ATP-binding protein. (288 aa)    
Predicted Functional Partners:
SFP85118.1
ABC-2 family transporter protein.
 
 0.923
SFP24837.1
DNA-binding transcriptional regulator YhcF, GntR family.
 
  
 0.903
SFP69905.1
Protein involved in gliding motility GldF.
  
 0.894
atpD
ATP synthase F1 subcomplex beta subunit; Produces ATP from ADP in the presence of a proton gradient across the membrane. The catalytic sites are hosted primarily by the beta subunits.
    
 
 0.786
atpA
F-type H+-transporting ATPase subunit alpha; Produces ATP from ADP in the presence of a proton gradient across the membrane. The alpha chain is a regulatory subunit.
    
   0.771
SFP24813.1
Hypothetical protein.
       0.657
SFP42645.1
ATP synthase F1 subcomplex epsilon subunit.
   
   0.617
SFP24758.1
Hypothetical protein.
       0.498
SFP51216.1
ATP-binding cassette, subfamily B.
  
0.498
SFP57487.1
ABC-type sugar transport system, substrate-binding protein, contains N-terminal xre family HTH domain.
  
 
 0.490
Your Current Organism:
Pseudarcicella hirudinis
NCBI taxonomy Id: 1079859
Other names: Arcicella sp. E92, CCM 7988, LMG 26720, LMG:26720, P. hirudinis, Pseudarcicella hirudinis Kampfer et al. 2012, strain E92
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