STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFP83502.12OG-Fe(II) oxygenase superfamily protein. (383 aa)    
Predicted Functional Partners:
tuf
Translation elongation factor 1A (EF-1A/EF-Tu); This protein promotes the GTP-dependent binding of aminoacyl- tRNA to the A-site of ribosomes during protein biosynthesis.
   
   0.872
SFQ20611.1
Hypothetical protein.
   
   0.872
SFP83444.1
Type I phosphodiesterase / nucleotide pyrophosphatase.
       0.773
SFP83473.1
Glutathione peroxidase; Belongs to the glutathione peroxidase family.
       0.773
SFP83531.1
Uncharacterized protein.
       0.767
SFP83561.1
Uncharacterized protein.
       0.690
SFP83419.1
Hypothetical protein.
       0.642
SFP59890.1
Coproporphyrinogen oxidase.
   
  
 0.508
SFP05562.1
ATPase components of ABC transporters with duplicated ATPase domains.
   
   0.420
SFP48081.1
ATP-binding cassette, subfamily F, uup.
   
   0.420
Your Current Organism:
Pseudarcicella hirudinis
NCBI taxonomy Id: 1079859
Other names: Arcicella sp. E92, CCM 7988, LMG 26720, LMG:26720, P. hirudinis, Pseudarcicella hirudinis Kampfer et al. 2012, strain E92
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