STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
OOG28884.1Conjugal transfer protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (105 aa)    
Predicted Functional Partners:
OOG28827.1
Integrating conjugative element protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.801
OOG28822.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.601
OOG28823.1
Integrating conjugative element protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.601
OOG28824.1
Integrating conjugative element protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.601
OOG28825.1
Integrating conjugative element protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.601
OOG28826.1
Conjugal transfer protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.601
OOG28883.1
Integrating conjugative element membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.601
OOG28828.1
Integrating conjugative element membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.576
OOG28882.1
Conjugative transfer ATPase; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.498
OOG28881.1
Integrating conjugative element protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.459
Your Current Organism:
Thioalkalivibrio denitrificans
NCBI taxonomy Id: 108003
Other names: DSM 13742, NCCB 100001, Thialkalivibrio denitrificans, Thioalkalivibrio denitrificans Sorokin et al. 2001, strain ALJD
Server load: low (28%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.