STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
OOG27249.1Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (258 aa)    
Predicted Functional Partners:
OOG27250.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.769
OOG27244.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.735
OOG27648.1
GGDEF domain-containing protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
 0.733
OOG20583.1
Serine protease; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.731
OOG20659.1
Putative O-glycosylation ligase, exosortase A system-associated; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.719
OOG21964.1
Sugar transferase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.712
OOG21962.1
Sugar transferase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.702
OOG27563.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
 0.699
OOG21966.1
Peptidoglycan bridge formation protein FemAB; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.691
OOG27259.1
Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.689
Your Current Organism:
Thioalkalivibrio denitrificans
NCBI taxonomy Id: 108003
Other names: DSM 13742, NCCB 100001, Thialkalivibrio denitrificans, Thioalkalivibrio denitrificans Sorokin et al. 2001, strain ALJD
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.