STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
OOG25672.1SpoVR family protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (518 aa)    
Predicted Functional Partners:
OOG25673.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the UPF0229 family.
 
  
 0.997
OOG25674.1
PrkA family serine protein kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.997
OOG23113.1
Phosphate starvation-inducible protein PhoH; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
    0.525
OOG22913.1
Spore maturation protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
  
 0.464
Your Current Organism:
Thioalkalivibrio denitrificans
NCBI taxonomy Id: 108003
Other names: DSM 13742, NCCB 100001, Thialkalivibrio denitrificans, Thioalkalivibrio denitrificans Sorokin et al. 2001, strain ALJD
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.