STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
OOG22998.1Type IV pili twitching motility protein PilT; Derived by automated computational analysis using gene prediction method: Protein Homology. (364 aa)    
Predicted Functional Partners:
OOG22999.1
Type IV pili twitching motility protein PilT; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
    
0.813
OOG23601.1
Type II secretion system protein F; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.795
OOG26785.1
MSHA biogenesis protein MshG; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.794
OOG23602.1
Prepilin peptidase; Cleaves type-4 fimbrial leader sequence and methylates the N- terminal (generally Phe) residue.
 
   
 0.783
OOG22997.1
Serine/threonine protein kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.762
OOG22935.1
Adenylate/guanylate cyclase domain-containing response regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.
     
 0.494
OOG24531.1
DNA internalization-related competence protein ComEC/Rec2; Derived by automated computational analysis using gene prediction method: Protein Homology.
     
 0.453
Your Current Organism:
Thioalkalivibrio denitrificans
NCBI taxonomy Id: 108003
Other names: DSM 13742, NCCB 100001, Thialkalivibrio denitrificans, Thioalkalivibrio denitrificans Sorokin et al. 2001, strain ALJD
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.