STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SCB08483.14-hydroxy-2-oxoheptanedioate aldolase; Belongs to the HpcH/HpaI aldolase family. (258 aa)    
Predicted Functional Partners:
SCB08501.1
2-oxohept-3-enedioate hydratase.
 
 0.992
SCB40039.1
2-oxohept-3-enedioate hydratase.
 
 0.988
SCB49940.1
2-keto-4-pentenoate hydratase.
 
 
 0.921
SCB31264.1
2-keto-4-pentenoate hydratase.
 
 
 0.915
SCB49469.1
4-hydroxy-2-oxoheptanedioate aldolase; Belongs to the HpcH/HpaI aldolase family.
  
  
 
0.912
SCB08510.1
5-carboxymethyl-2-hydroxymuconate isomerase.
 
  
 0.902
gabD
Succinate semialdehyde dehydrogenase; Belongs to the aldehyde dehydrogenase family.
  
 
 0.893
SCB08471.1
Altronate hydrolase.
 
 
  0.865
SCB08521.1
5-carboxymethyl-2-hydroxymuconic-semialdehyde dehydrogenase; Belongs to the aldehyde dehydrogenase family.
  
 
 0.820
SCB10598.1
5-carboxymethyl-2-hydroxymuconate isomerase.
  
  
 0.799
Your Current Organism:
Bradyrhizobium yuanmingense
NCBI taxonomy Id: 108015
Other names: B. yuanmingense, Bradyrhizobium sp. B071, Bradyrhizobium sp. LMTR 28, Bradyrhizobium sp. LMTR 41, Bradyrhizobium sp. mas13, Bradyrhizobium sp. mas28, Bradyrhizobium sp. mas34, Bradyrhizobium sp. mas46, Bradyrhizobium sp. mas47, Bradyrhizobium yuanmingense Yao et al. 2002, CCBAU 10071, CFNEB 101, CIP 108027, NBRC 100594
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