STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SCB06920.1Transcriptional regulator, IclR family. (280 aa)    
Predicted Functional Partners:
SCB34598.1
Sensor histidine kinase inhibitor, KipI family.
  
    0.714
SCB29458.1
Transcriptional regulator, IclR family.
  
     0.651
SCB34606.1
Biotin-dependent carboxylase uncharacterized domain-containing protein.
  
    0.651
SCB46117.1
Transcriptional regulator, IclR family.
  
     0.634
SCB06910.1
Putative tricarboxylic transport membrane protein.
 
     0.581
SCB06916.1
Putative tricarboxylic transport membrane protein.
 
     0.581
SCB06924.1
Acetyl coenzyme A synthetase (ADP forming), alpha domain-containing protein.
  
 
  0.527
SCB06914.1
Putative tricarboxylic transport membrane protein.
       0.524
SCB08841.1
Uncharacterized protein YcsI, UPF0317 family; Belongs to the D-glutamate cyclase family.
  
    0.488
SCB12410.1
2-oxoglutarate ferredoxin oxidoreductase subunit alpha.
    
  0.467
Your Current Organism:
Bradyrhizobium yuanmingense
NCBI taxonomy Id: 108015
Other names: B. yuanmingense, Bradyrhizobium sp. B071, Bradyrhizobium sp. LMTR 28, Bradyrhizobium sp. LMTR 41, Bradyrhizobium sp. mas13, Bradyrhizobium sp. mas28, Bradyrhizobium sp. mas34, Bradyrhizobium sp. mas46, Bradyrhizobium sp. mas47, Bradyrhizobium yuanmingense Yao et al. 2002, CCBAU 10071, CFNEB 101, CIP 108027, NBRC 100594
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