STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SCB19346.12,3-dihydro-2,3-dihydroxybenzoyl-CoA ring cleavage enzyme. (562 aa)    
Predicted Functional Partners:
SCB19353.1
benzoyl-CoA oxygenase, component B.
 
 
 0.991
SCB10988.1
Signal transduction histidine kinase.
   
 0.927
SCB47570.1
Signal transduction histidine kinase.
    
  0.921
SCB16303.1
PAS domain S-box-containing protein.
    
 0.919
SCB31602.1
PAS domain S-box-containing protein.
    
 0.919
SCB35561.1
Signal transduction histidine kinase.
    
 0.919
SCB45372.1
PAS domain S-box-containing protein.
    
 0.919
SCB50297.1
PAS domain S-box-containing protein.
    
 0.919
SCB19338.1
Pimeloyl-ACP methyl ester carboxylesterase.
 
 
   0.897
SCB20121.1
Na+/proline symporter.
   
 0.894
Your Current Organism:
Bradyrhizobium yuanmingense
NCBI taxonomy Id: 108015
Other names: B. yuanmingense, Bradyrhizobium sp. B071, Bradyrhizobium sp. LMTR 28, Bradyrhizobium sp. LMTR 41, Bradyrhizobium sp. mas13, Bradyrhizobium sp. mas28, Bradyrhizobium sp. mas34, Bradyrhizobium sp. mas46, Bradyrhizobium sp. mas47, Bradyrhizobium yuanmingense Yao et al. 2002, CCBAU 10071, CFNEB 101, CIP 108027, NBRC 100594
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