STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SCB19875.1PAN domain-containing protein. (188 aa)    
Predicted Functional Partners:
SCB26549.1
Hypothetical protein.
  
 
 
 0.965
SCB37984.1
Two-component system, chemotaxis family, CheB/CheR fusion protein.
    
 
 0.860
smc
Condensin subunit Smc; Required for chromosome condensation and partitioning. Belongs to the SMC family.
    
 
 0.860
SCB49385.1
EF hand.
  
     0.773
SCB11762.1
Protein of unknown function.
  
     0.772
SCB07894.1
Protein of unknown function.
  
     0.770
SCB37868.1
Hypothetical protein.
  
     0.768
SCB45081.1
Hypothetical protein.
  
     0.760
SCB07279.1
Hypothetical protein.
  
     0.759
SCB43991.1
Dolichyl-phosphate-mannose-protein mannosyltransferase.
  
     0.759
Your Current Organism:
Bradyrhizobium yuanmingense
NCBI taxonomy Id: 108015
Other names: B. yuanmingense, Bradyrhizobium sp. B071, Bradyrhizobium sp. LMTR 28, Bradyrhizobium sp. LMTR 41, Bradyrhizobium sp. mas13, Bradyrhizobium sp. mas28, Bradyrhizobium sp. mas34, Bradyrhizobium sp. mas46, Bradyrhizobium sp. mas47, Bradyrhizobium yuanmingense Yao et al. 2002, CCBAU 10071, CFNEB 101, CIP 108027, NBRC 100594
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.