STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SCB26410.13-methylfumaryl-CoA hydratase. (283 aa)    
Predicted Functional Partners:
SCB26396.1
Hypothetical protein.
 
     0.901
SCB17406.1
Catechol 2,3-dioxygenase.
 
    0.882
SCB26404.1
Crotonobetainyl-CoA:carnitine CoA-transferase CaiB; Belongs to the CoA-transferase III family.
 
 
 0.876
SCB12769.1
Citrate lyase subunit beta / citryl-CoA lyase; Belongs to the HpcH/HpaI aldolase family.
 
 
 0.869
SCB15163.1
Citrate lyase subunit beta / citryl-CoA lyase; Belongs to the HpcH/HpaI aldolase family.
  
 
 0.852
SCB38970.1
malyl-CoA/(S)-citramalyl-CoA lyase; Belongs to the HpcH/HpaI aldolase family.
  
 
 0.852
SCB17251.1
2-methylcitrate dehydratase PrpD.
 
  
 0.814
SCB42739.1
2-methylcitrate dehydratase PrpD.
 
  
 0.790
SCB27639.1
2-methylcitrate dehydratase PrpD.
 
  
 0.783
SCB27654.1
2-methylcitrate dehydratase PrpD.
 
  
 0.773
Your Current Organism:
Bradyrhizobium yuanmingense
NCBI taxonomy Id: 108015
Other names: B. yuanmingense, Bradyrhizobium sp. B071, Bradyrhizobium sp. LMTR 28, Bradyrhizobium sp. LMTR 41, Bradyrhizobium sp. mas13, Bradyrhizobium sp. mas28, Bradyrhizobium sp. mas34, Bradyrhizobium sp. mas46, Bradyrhizobium sp. mas47, Bradyrhizobium yuanmingense Yao et al. 2002, CCBAU 10071, CFNEB 101, CIP 108027, NBRC 100594
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