STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SCB39816.1Hypothetical protein. (315 aa)    
Predicted Functional Partners:
SCB39812.1
TRAP transporter, 4TM/12TM fusion protein.
 
 
  0.990
SCB39808.1
Hypothetical protein.
 
 
  0.941
SCB29437.1
TRAP transporter, 4TM/12TM fusion protein.
 
 
  0.923
SCB12976.1
TRAP-type C4-dicarboxylate transport system, small permease component.
  
  
  0.615
SCB46160.1
PAS/PAC sensor hybrid histidine kinase.
    
  0.576
SCB17104.1
Two-component system, NtrC family, sensor kinase.
    
  0.569
SCB23594.1
TRAP-type C4-dicarboxylate transport system, substrate-binding protein.
  
  
  0.514
SCB24635.1
TRAP-type C4-dicarboxylate transport system, substrate-binding protein.
  
  
  0.495
SCB34298.1
TRAP transporter, DctM subunit.
  
  
  0.492
SCB10988.1
Signal transduction histidine kinase.
    
  0.491
Your Current Organism:
Bradyrhizobium yuanmingense
NCBI taxonomy Id: 108015
Other names: B. yuanmingense, Bradyrhizobium sp. B071, Bradyrhizobium sp. LMTR 28, Bradyrhizobium sp. LMTR 41, Bradyrhizobium sp. mas13, Bradyrhizobium sp. mas28, Bradyrhizobium sp. mas34, Bradyrhizobium sp. mas46, Bradyrhizobium sp. mas47, Bradyrhizobium yuanmingense Yao et al. 2002, CCBAU 10071, CFNEB 101, CIP 108027, NBRC 100594
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