STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SCB45016.1Peptide/nickel transport system substrate-binding protein. (535 aa)    
Predicted Functional Partners:
SCB45007.1
Peptide/nickel transport system permease protein.
 
  0.871
SCB45010.1
Peptide/nickel transport system permease protein.
 
  0.869
SCB45013.1
Glutamate carboxypeptidase.
 
     0.845
SCB47379.1
Peptide/nickel transport system permease protein.
 
  0.798
SCB45001.1
Microcystin degradation protein MlrC, contains DUF1485 domain; Involved in peptidolytic degradation of cyclic heptapeptide hepatotoxin microcystin (MC); Belongs to the peptidase M81 family.
 
     0.788
SCB47381.1
Peptide/nickel transport system permease protein.
 
  0.786
SCB40270.1
Peptide/nickel transport system permease protein.
  
  0.721
SCB40264.1
Peptide/nickel transport system permease protein.
  
  0.646
SCB21611.1
Peptide/nickel transport system permease protein.
 
  0.629
SCB21619.1
Peptide/nickel transport system permease protein.
 
  0.594
Your Current Organism:
Bradyrhizobium yuanmingense
NCBI taxonomy Id: 108015
Other names: B. yuanmingense, Bradyrhizobium sp. B071, Bradyrhizobium sp. LMTR 28, Bradyrhizobium sp. LMTR 41, Bradyrhizobium sp. mas13, Bradyrhizobium sp. mas28, Bradyrhizobium sp. mas34, Bradyrhizobium sp. mas46, Bradyrhizobium sp. mas47, Bradyrhizobium yuanmingense Yao et al. 2002, CCBAU 10071, CFNEB 101, CIP 108027, NBRC 100594
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.