STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SCB47089.1Uncharacterized membrane protein. (168 aa)    
Predicted Functional Partners:
SCB47084.1
Hypothetical protein.
       0.773
SCB47079.1
Succinate dehydrogenase / fumarate reductase iron-sulfur subunit.
       0.750
SCB38015.1
Threonine dehydrogenase.
  
     0.623
SCB47118.1
Short-chain dehydrogenase.
  
     0.598
SCB47075.1
NUDIX domain-containing protein.
 
     0.595
SCB10988.1
Signal transduction histidine kinase.
  
     0.587
SCB24798.1
Uncharacterized membrane protein.
  
     0.497
SCB47070.1
SIR2-like domain-containing protein.
       0.444
SCB38117.1
Protein of unknown function.
  
     0.432
SCB47175.1
Spore maturation protein CgeB.
  
     0.428
Your Current Organism:
Bradyrhizobium yuanmingense
NCBI taxonomy Id: 108015
Other names: B. yuanmingense, Bradyrhizobium sp. B071, Bradyrhizobium sp. LMTR 28, Bradyrhizobium sp. LMTR 41, Bradyrhizobium sp. mas13, Bradyrhizobium sp. mas28, Bradyrhizobium sp. mas34, Bradyrhizobium sp. mas46, Bradyrhizobium sp. mas47, Bradyrhizobium yuanmingense Yao et al. 2002, CCBAU 10071, CFNEB 101, CIP 108027, NBRC 100594
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