STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SCB48929.1Pilus assembly protein CpaF. (399 aa)    
Predicted Functional Partners:
SCB48925.1
Tight adherence protein B.
 
  
 0.986
SCB48922.1
Tight adherence protein C.
 
  
 0.980
SCB23925.1
Tight adherence protein B.
 
  
 0.942
SCB48936.1
Pilus assembly protein CpaB.
 
  
 0.932
SCB48933.1
Pilus assembly protein CpaE.
 
  
 0.930
SCB23919.1
Tight adherence protein C.
 
  
 0.917
SCB16254.1
Pilus assembly protein CpaB.
 
  
 0.878
SCB23950.1
Pilus assembly protein CpaB.
 
  
 0.878
SCB48911.1
Putative Flp pilus-assembly TadE/G-like.
 
  
 0.872
SCB53568.1
Type II and III secretion system protein.
 
  
 0.871
Your Current Organism:
Bradyrhizobium yuanmingense
NCBI taxonomy Id: 108015
Other names: B. yuanmingense, Bradyrhizobium sp. B071, Bradyrhizobium sp. LMTR 28, Bradyrhizobium sp. LMTR 41, Bradyrhizobium sp. mas13, Bradyrhizobium sp. mas28, Bradyrhizobium sp. mas34, Bradyrhizobium sp. mas46, Bradyrhizobium sp. mas47, Bradyrhizobium yuanmingense Yao et al. 2002, CCBAU 10071, CFNEB 101, CIP 108027, NBRC 100594
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.