STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SCB53237.1Integrase core domain-containing protein. (92 aa)    
Predicted Functional Partners:
SCB52676.1
HTH-like domain-containing protein.
 
  
 0.792
SCB53167.1
Putative transposase.
 
    0.781
SCB51536.1
HTH-like domain-containing protein.
 
    0.780
SCB52034.1
Transposase.
 
     0.779
SCB52037.1
HTH-like domain-containing protein.
 
    0.779
SCB53604.1
Transposase.
 
     0.778
SCB53633.1
Hypothetical protein.
 
    0.776
SCB53601.1
Transposase and inactivated derivatives.
 
     0.775
SCB53239.1
Integrase core domain-containing protein.
       0.773
SCB52378.1
Transposase.
 
     0.771
Your Current Organism:
Bradyrhizobium yuanmingense
NCBI taxonomy Id: 108015
Other names: B. yuanmingense, Bradyrhizobium sp. B071, Bradyrhizobium sp. LMTR 28, Bradyrhizobium sp. LMTR 41, Bradyrhizobium sp. mas13, Bradyrhizobium sp. mas28, Bradyrhizobium sp. mas34, Bradyrhizobium sp. mas46, Bradyrhizobium sp. mas47, Bradyrhizobium yuanmingense Yao et al. 2002, CCBAU 10071, CFNEB 101, CIP 108027, NBRC 100594
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