STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SPI_00900Ccr4-not transcription subunit 3. (709 aa)    
Predicted Functional Partners:
SPI_08316
Cell differentiation protein.
    
 0.998
SPI_00150
Ccr4-not transcription complex subunit.
    
 0.998
SPI_02008
Ccr4-not core complex subunit.
   
 0.992
SPI_09043
Ccr4-not core complex subunit.
    
 0.991
SPI_07538
Transcriptional effector.
    
 0.980
SPI_06955
Not2 family protein.
    
 0.980
SPI_06956
Not2 family protein.
    
 0.971
SPI_01146
Topisomerase 2 associated protein.
   
 
 0.962
SPI_02040
ATP dependent RNA helicase; Belongs to the DEAD box helicase family.
   
 0.949
SPI_04910
DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
    
 
 0.884
Your Current Organism:
Sporothrix insectorum
NCBI taxonomy Id: 1081102
Other names: S. insectorum RCEF 264, Sporothrix insectorum RCEF 264
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.