STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDF45089.1Transcriptional regulator, TetR family. (187 aa)    
Predicted Functional Partners:
SDF45056.1
Predicted arabinose efflux permease, MFS family.
 
     0.918
SDF45123.1
Transcriptional regulator, TetR family.
 
     0.616
SDF44244.1
Transcriptional regulator, TetR family.
  
     0.554
SDG00042.1
PAS domain S-box-containing protein.
    
 
 0.462
SDG22477.1
PAS domain S-box-containing protein.
    
 
 0.462
SDG28686.1
Signal transduction histidine kinase.
    
 
 0.426
SDG39296.1
Two-component system, chemotaxis family, CheB/CheR fusion protein.
    
 
 0.419
SDF75093.1
Glycosyl transferase family 2.
      
 0.418
pth
peptidyl-tRNA hydrolase; The natural substrate for this enzyme may be peptidyl-tRNAs which drop off the ribosome during protein synthesis. Belongs to the PTH family.
   
    0.407
SDG11288.1
PAS domain S-box-containing protein.
    
 
 0.404
Your Current Organism:
Limimonas halophila
NCBI taxonomy Id: 1082479
Other names: DSM 25584, IBRC-M 10018, L. halophila, Limimonas halophila Amoozegar et al. 2013, Rhodospirillaceae bacterium Ia16, strain IA16
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.