STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDF42893.1Putative lumazine-binding. (123 aa)    
Predicted Functional Partners:
rpsJ
SSU ribosomal protein S10P; Involved in the binding of tRNA to the ribosomes. Belongs to the universal ribosomal protein uS10 family.
   
   0.882
SDF55811.1
NAD-dependent formate dehydrogenase flavoprotein subunit.
  
   0.698
rplN
LSU ribosomal protein L14P; Binds to 23S rRNA. Forms part of two intersubunit bridges in the 70S ribosome; Belongs to the universal ribosomal protein uL14 family.
    
   0.695
SDF57705.1
Superoxide dismutase, Cu-Zn family.
   
 
 0.660
SDF49897.1
EF hand.
   
  0.631
SDF51969.1
ATP-binding cassette, subfamily B.
   
  0.602
SDF78750.1
ATP-binding cassette, subfamily B/ATP-binding cassette, subfamily C, CydC.
   
  0.602
SDF76947.1
Acetoin utilization protein AcuC.
    
  0.601
SDF90638.1
Acetoin utilization deacetylase AcuC.
    
  0.601
SDG30989.1
Acetoin utilization deacetylase AcuC.
    
  0.601
Your Current Organism:
Limimonas halophila
NCBI taxonomy Id: 1082479
Other names: DSM 25584, IBRC-M 10018, L. halophila, Limimonas halophila Amoozegar et al. 2013, Rhodospirillaceae bacterium Ia16, strain IA16
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