STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDF75471.1Prepilin-type N-terminal cleavage/methylation domain-containing protein. (254 aa)    
Predicted Functional Partners:
SDG51042.1
Type II secretion system protein J (GspJ).
  
 0.920
SDF72293.1
Type II secretion system protein K (GspK).
  
 
 0.890
SDF75327.1
Prepilin-type N-terminal cleavage/methylation domain-containing protein.
 
     0.831
SDF75585.1
General secretion pathway protein D; Belongs to the bacterial secretin family.
 
  
 0.817
SDF75120.1
General secretion pathway protein E/type IV pilus assembly protein PilB.
 
 0.792
SDF75164.1
Type IV pilus assembly protein PilC.
 
  
 0.703
SDG51204.1
Type II secretion system protein E (GspE); Involved in a type II secretion system (T2SS, formerly general secretion pathway, GSP) for the export of proteins.
  
 0.668
SDF75357.1
Leader peptidase (prepilin peptidase) / N-methyltransferase.
 
  
 0.585
SDF75445.1
Prepilin-type N-terminal cleavage/methylation domain-containing protein.
 
    
0.572
SDG51174.1
Type II secretion system protein F (GspF).
  
  
 0.565
Your Current Organism:
Limimonas halophila
NCBI taxonomy Id: 1082479
Other names: DSM 25584, IBRC-M 10018, L. halophila, Limimonas halophila Amoozegar et al. 2013, Rhodospirillaceae bacterium Ia16, strain IA16
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.