STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDF92206.1Aldehyde dehydrogenase (NAD+); Belongs to the aldehyde dehydrogenase family. (480 aa)    
Predicted Functional Partners:
SDG49990.1
Glutamate synthase (NADPH) large subunit.
  
 
 0.855
SDF92234.1
Zn-dependent dipeptidase, dipeptidase homolog.
 
     0.807
SDG48868.1
Malate dehydrogenase (oxaloacetate-decarboxylating)(NADP+); Belongs to the malic enzymes family.
  
 
 0.762
SDF75093.1
Glycosyl transferase family 2.
  
 
 0.732
SDG11543.1
L-proline dehydrogenase; Oxidizes proline to glutamate for use as a carbon and nitrogen source; In the C-terminal section; belongs to the aldehyde dehydrogenase family.
 
0.684
SDF92260.1
Hypothetical protein.
 
     0.667
SDF71396.1
Pyruvate dehydrogenase E1 component beta subunit.
  
 0.663
SDF60620.1
Long-chain acyl-CoA synthetase.
  
 
 0.647
SDF97823.1
Indolepyruvate ferredoxin oxidoreductase.
    
 0.586
SDF92288.1
Protein of unknown function.
    
  0.585
Your Current Organism:
Limimonas halophila
NCBI taxonomy Id: 1082479
Other names: DSM 25584, IBRC-M 10018, L. halophila, Limimonas halophila Amoozegar et al. 2013, Rhodospirillaceae bacterium Ia16, strain IA16
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.