Export your current network:
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
| node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
| SDF92821.1 | SDF92845.1 | SAMN05216241_103199 | SAMN05216241_103200 | Flagellar protein FliS. | Flagellin hook IN motif-containing protein; Required for morphogenesis and for the elongation of the flagellar filament by facilitating polymerization of the flagellin monomers at the tip of growing filament. Forms a capping structure, which prevents flagellin subunits (transported through the central channel of the flagellum) from leaking out without polymerization at the distal end. | 0.993 |
| SDF92821.1 | SDF92874.1 | SAMN05216241_103199 | SAMN05216241_103201 | Flagellar protein FliS. | FlaG protein. | 0.971 |
| SDF92821.1 | SDF92894.1 | SAMN05216241_103199 | SAMN05216241_103202 | Flagellar protein FliS. | Flagellin; Flagellin is the subunit protein which polymerizes to form the filaments of bacterial flagella. | 0.998 |
| SDF92821.1 | SDF93576.1 | SAMN05216241_103199 | SAMN05216241_103233 | Flagellar protein FliS. | Flagellar assembly factor FliW; Acts as an anti-CsrA protein, binds CsrA and prevents it from repressing translation of its target genes, one of which is flagellin. Binds to flagellin and participates in the assembly of the flagellum. Belongs to the FliW family. | 0.813 |
| SDF92821.1 | SDF93604.1 | SAMN05216241_103199 | SAMN05216241_103234 | Flagellar protein FliS. | Flagellin FlgL; Flagellin is the subunit protein which polymerizes to form the filaments of bacterial flagella. | 0.990 |
| SDF92821.1 | SDF93639.1 | SAMN05216241_103199 | SAMN05216241_103235 | Flagellar protein FliS. | Flagellar hook-associated protein 1 FlgK; Belongs to the flagella basal body rod proteins family. | 0.983 |
| SDF92821.1 | SDF93900.1 | SAMN05216241_103199 | SAMN05216241_103246 | Flagellar protein FliS. | Flagellar motor switch protein FliM; FliM is one of three proteins (FliG, FliN, FliM) that forms the rotor-mounted switch complex (C ring), located at the base of the basal body. This complex interacts with the CheY and CheZ chemotaxis proteins, in addition to contacting components of the motor that determine the direction of flagellar rotation. | 0.933 |
| SDF92821.1 | csrA | SAMN05216241_103199 | SAMN05216241_103263 | Flagellar protein FliS. | Carbon storage regulator, CsrA; A translational regulator that binds mRNA to regulate translation initiation and/or mRNA stability. Usually binds in the 5'- UTR at or near the Shine-Dalgarno sequence preventing ribosome-binding, thus repressing translation. Its main target seems to be the major flagellin gene, while its function is anatagonized by FliW. | 0.656 |
| SDF92821.1 | flgI | SAMN05216241_103199 | SAMN05216241_103238 | Flagellar protein FliS. | Flagellar P-ring protein precursor FlgI; Assembles around the rod to form the L-ring and probably protects the motor/basal body from shearing forces during rotation. | 0.561 |
| SDF92845.1 | SDF92821.1 | SAMN05216241_103200 | SAMN05216241_103199 | Flagellin hook IN motif-containing protein; Required for morphogenesis and for the elongation of the flagellar filament by facilitating polymerization of the flagellin monomers at the tip of growing filament. Forms a capping structure, which prevents flagellin subunits (transported through the central channel of the flagellum) from leaking out without polymerization at the distal end. | Flagellar protein FliS. | 0.993 |
| SDF92845.1 | SDF92874.1 | SAMN05216241_103200 | SAMN05216241_103201 | Flagellin hook IN motif-containing protein; Required for morphogenesis and for the elongation of the flagellar filament by facilitating polymerization of the flagellin monomers at the tip of growing filament. Forms a capping structure, which prevents flagellin subunits (transported through the central channel of the flagellum) from leaking out without polymerization at the distal end. | FlaG protein. | 0.978 |
| SDF92845.1 | SDF92894.1 | SAMN05216241_103200 | SAMN05216241_103202 | Flagellin hook IN motif-containing protein; Required for morphogenesis and for the elongation of the flagellar filament by facilitating polymerization of the flagellin monomers at the tip of growing filament. Forms a capping structure, which prevents flagellin subunits (transported through the central channel of the flagellum) from leaking out without polymerization at the distal end. | Flagellin; Flagellin is the subunit protein which polymerizes to form the filaments of bacterial flagella. | 0.974 |
| SDF92845.1 | SDF93576.1 | SAMN05216241_103200 | SAMN05216241_103233 | Flagellin hook IN motif-containing protein; Required for morphogenesis and for the elongation of the flagellar filament by facilitating polymerization of the flagellin monomers at the tip of growing filament. Forms a capping structure, which prevents flagellin subunits (transported through the central channel of the flagellum) from leaking out without polymerization at the distal end. | Flagellar assembly factor FliW; Acts as an anti-CsrA protein, binds CsrA and prevents it from repressing translation of its target genes, one of which is flagellin. Binds to flagellin and participates in the assembly of the flagellum. Belongs to the FliW family. | 0.906 |
| SDF92845.1 | SDF93604.1 | SAMN05216241_103200 | SAMN05216241_103234 | Flagellin hook IN motif-containing protein; Required for morphogenesis and for the elongation of the flagellar filament by facilitating polymerization of the flagellin monomers at the tip of growing filament. Forms a capping structure, which prevents flagellin subunits (transported through the central channel of the flagellum) from leaking out without polymerization at the distal end. | Flagellin FlgL; Flagellin is the subunit protein which polymerizes to form the filaments of bacterial flagella. | 0.963 |
| SDF92845.1 | SDF93639.1 | SAMN05216241_103200 | SAMN05216241_103235 | Flagellin hook IN motif-containing protein; Required for morphogenesis and for the elongation of the flagellar filament by facilitating polymerization of the flagellin monomers at the tip of growing filament. Forms a capping structure, which prevents flagellin subunits (transported through the central channel of the flagellum) from leaking out without polymerization at the distal end. | Flagellar hook-associated protein 1 FlgK; Belongs to the flagella basal body rod proteins family. | 0.973 |
| SDF92845.1 | SDF93900.1 | SAMN05216241_103200 | SAMN05216241_103246 | Flagellin hook IN motif-containing protein; Required for morphogenesis and for the elongation of the flagellar filament by facilitating polymerization of the flagellin monomers at the tip of growing filament. Forms a capping structure, which prevents flagellin subunits (transported through the central channel of the flagellum) from leaking out without polymerization at the distal end. | Flagellar motor switch protein FliM; FliM is one of three proteins (FliG, FliN, FliM) that forms the rotor-mounted switch complex (C ring), located at the base of the basal body. This complex interacts with the CheY and CheZ chemotaxis proteins, in addition to contacting components of the motor that determine the direction of flagellar rotation. | 0.961 |
| SDF92845.1 | csrA | SAMN05216241_103200 | SAMN05216241_103263 | Flagellin hook IN motif-containing protein; Required for morphogenesis and for the elongation of the flagellar filament by facilitating polymerization of the flagellin monomers at the tip of growing filament. Forms a capping structure, which prevents flagellin subunits (transported through the central channel of the flagellum) from leaking out without polymerization at the distal end. | Carbon storage regulator, CsrA; A translational regulator that binds mRNA to regulate translation initiation and/or mRNA stability. Usually binds in the 5'- UTR at or near the Shine-Dalgarno sequence preventing ribosome-binding, thus repressing translation. Its main target seems to be the major flagellin gene, while its function is anatagonized by FliW. | 0.689 |
| SDF92845.1 | flgI | SAMN05216241_103200 | SAMN05216241_103238 | Flagellin hook IN motif-containing protein; Required for morphogenesis and for the elongation of the flagellar filament by facilitating polymerization of the flagellin monomers at the tip of growing filament. Forms a capping structure, which prevents flagellin subunits (transported through the central channel of the flagellum) from leaking out without polymerization at the distal end. | Flagellar P-ring protein precursor FlgI; Assembles around the rod to form the L-ring and probably protects the motor/basal body from shearing forces during rotation. | 0.726 |
| SDF92874.1 | SDF92821.1 | SAMN05216241_103201 | SAMN05216241_103199 | FlaG protein. | Flagellar protein FliS. | 0.971 |
| SDF92874.1 | SDF92845.1 | SAMN05216241_103201 | SAMN05216241_103200 | FlaG protein. | Flagellin hook IN motif-containing protein; Required for morphogenesis and for the elongation of the flagellar filament by facilitating polymerization of the flagellin monomers at the tip of growing filament. Forms a capping structure, which prevents flagellin subunits (transported through the central channel of the flagellum) from leaking out without polymerization at the distal end. | 0.978 |
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