STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDF98054.1acetyl-CoA C-acetyltransferase; Belongs to the thiolase-like superfamily. Thiolase family. (394 aa)    
Predicted Functional Partners:
SDG46769.1
3-hydroxyacyl-CoA dehydrogenase.
 0.998
SDF93027.1
Carnitine 3-dehydrogenase.
 
 0.985
SDF98086.1
isovaleryl-CoA dehydrogenase.
  
 0.969
SDF97989.1
methylglutaconyl-CoA hydratase.
  
 0.960
SDF98150.1
Hypothetical protein.
  
 0.954
SDF91572.1
Enoyl-CoA hydratase/carnithine racemase.
  
 0.930
SDF93071.1
crotonobetainyl-CoA hydratase; Belongs to the enoyl-CoA hydratase/isomerase family.
  
 0.930
SDF97655.1
Short chain enoyl-CoA hydratase; Belongs to the enoyl-CoA hydratase/isomerase family.
 
 0.930
SDF97858.1
3-hydroxyisobutyryl-CoA hydrolase.
  
 0.930
SDF97921.1
hydroxymethylglutaryl-CoA lyase.
  
 
 0.929
Your Current Organism:
Limimonas halophila
NCBI taxonomy Id: 1082479
Other names: DSM 25584, IBRC-M 10018, L. halophila, Limimonas halophila Amoozegar et al. 2013, Rhodospirillaceae bacterium Ia16, strain IA16
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