STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDG07839.1Peptide/nickel transport system substrate-binding protein. (531 aa)    
Predicted Functional Partners:
SDG28093.1
Peptide/nickel transport system permease protein.
 
 0.904
SDG28119.1
Peptide/nickel transport system permease protein.
 
 0.901
SDG28779.1
Peptide/nickel transport system permease protein.
 
 0.895
SDG28760.1
Peptide/nickel transport system permease protein.
 
 0.894
SDG28149.1
Peptide/nickel transport system ATP-binding protein/peptide/nickel transport system ATP-binding protein; Belongs to the ABC transporter superfamily.
 
 
 0.891
SDG28182.1
Peptide/nickel transport system ATP-binding protein; Belongs to the ABC transporter superfamily.
 
  
  0.827
SDG44130.1
Microcin C transport system substrate-binding protein.
  
 
0.581
SDG44220.1
Microcin C transport system ATP-binding protein; Belongs to the ABC transporter superfamily.
 
 
  0.528
SDG07804.1
Hypothetical protein.
       0.477
SDF93849.1
Flagellar basal-body rod protein FlgF; Belongs to the flagella basal body rod proteins family.
    
   0.470
Your Current Organism:
Limimonas halophila
NCBI taxonomy Id: 1082479
Other names: DSM 25584, IBRC-M 10018, L. halophila, Limimonas halophila Amoozegar et al. 2013, Rhodospirillaceae bacterium Ia16, strain IA16
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.