STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDG15478.1Glycosyltransferase involved in cell wall bisynthesis. (408 aa)    
Predicted Functional Partners:
SDG15537.1
Glycosyltransferase involved in cell wall bisynthesis.
 
     0.919
SDG15421.1
Sugar transferase involved in LPS biosynthesis (colanic, teichoic acid).
 
  
 0.847
SDG15443.1
Membrane protein involved in the export of O-antigen and teichoic acid.
  
 
  0.844
SDG15508.1
Hypothetical protein.
       0.773
SDG15393.1
O-Antigen ligase.
  
 
 0.698
SDF75093.1
Glycosyl transferase family 2.
 
  
 0.660
SDF75028.1
Mannose-6-phosphate isomerase, type 2.
  
 
 0.637
SDG17456.1
Mannose-1-phosphate guanylyltransferase / mannose-6-phosphate isomerase; Belongs to the mannose-6-phosphate isomerase type 2 family.
  
 
 0.637
SDF76604.1
dTDP-glucose 4,6-dehydratase; Belongs to the NAD(P)-dependent epimerase/dehydratase family. dTDP-glucose dehydratase subfamily.
  
 
 0.526
SDF76625.1
Glucose-1-phosphate thymidylyltransferase.
  
 
 0.508
Your Current Organism:
Limimonas halophila
NCBI taxonomy Id: 1082479
Other names: DSM 25584, IBRC-M 10018, L. halophila, Limimonas halophila Amoozegar et al. 2013, Rhodospirillaceae bacterium Ia16, strain IA16
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.