STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDG23737.1Nucleotide-binding universal stress protein, UspA family. (167 aa)    
Predicted Functional Partners:
SDG23763.1
Hypothetical protein.
 
   
 0.925
SDG03343.1
Conserved hypothetical protein.
 
     0.843
SDG46350.1
Hypothetical protein.
  
     0.658
SDG16218.1
Chemotaxis phosphatase, CheZ.
  
     0.609
SDG43945.1
Tellurite resistance protein TerB.
  
     0.566
SDF53476.1
Predicted DNA-binding protein, contains Ribbon-helix-helix (RHH) domain.
  
     0.560
SDF56909.1
Hook-length control protein FliK.
  
     0.531
SDG34738.1
Hypothetical protein.
  
     0.527
SDF77929.1
Cytochrome b pre-mRNA-processing protein 3.
  
     0.507
SDF44795.1
Hypothetical protein.
  
     0.504
Your Current Organism:
Limimonas halophila
NCBI taxonomy Id: 1082479
Other names: DSM 25584, IBRC-M 10018, L. halophila, Limimonas halophila Amoozegar et al. 2013, Rhodospirillaceae bacterium Ia16, strain IA16
Server load: low (26%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.