STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDG23946.1Membrane-bound lytic murein transglycosylase A. (403 aa)    
Predicted Functional Partners:
SDG23977.1
Predicted lipid-binding transport protein, Tim44 family.
 
     0.857
SDG23826.1
DNA-nicking endonuclease, Smr domain.
       0.686
SDG23887.1
L-lactate dehydrogenase complex protein LldF.
       0.684
SDG23917.1
L-lactate dehydrogenase complex protein LldE.
       0.684
SDG24008.1
UPF0716 protein FxsA.
       0.660
SDG23861.1
L-lactate dehydrogenase complex protein LldG.
       0.655
SDG23795.1
Transcriptional regulator, contains XRE-family HTH domain.
       0.558
secB
Protein translocase subunit secB; One of the proteins required for the normal export of preproteins out of the cell cytoplasm. It is a molecular chaperone that binds to a subset of precursor proteins, maintaining them in a translocation-competent state. It also specifically binds to its receptor SecA.
 
     0.500
SDG49990.1
Glutamate synthase (NADPH) large subunit.
      
 0.418
lptD
LPS-assembly protein; Involved in the assembly of lipopolysaccharide (LPS) at the surface of the outer membrane; Belongs to the LptD family.
 
   
 0.410
Your Current Organism:
Limimonas halophila
NCBI taxonomy Id: 1082479
Other names: DSM 25584, IBRC-M 10018, L. halophila, Limimonas halophila Amoozegar et al. 2013, Rhodospirillaceae bacterium Ia16, strain IA16
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.