STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDG33502.1Pimeloyl-ACP methyl ester carboxylesterase. (285 aa)    
Predicted Functional Partners:
SDF60620.1
Long-chain acyl-CoA synthetase.
  
 0.919
SDG28473.1
Pimeloyl-ACP methyl ester carboxylesterase.
  
     0.737
SDF75093.1
Glycosyl transferase family 2.
    
 0.736
SDG34590.1
Putative hydrolase of the HAD superfamily.
  
 
 0.632
SDF55746.1
2-haloacid dehalogenase.
  
 
 0.563
SDG33478.1
Transcriptional regulator, LysR family; Belongs to the LysR transcriptional regulatory family.
       0.540
acpP
Acyl carrier protein; Carrier of the growing fatty acid chain in fatty acid biosynthesis.
    
  0.534
SDG18979.1
Acyl carrier protein.
    
  0.534
guaA
GMP synthase (glutamine-hydrolysing); Catalyzes the synthesis of GMP from XMP.
   
  0.512
SDF71396.1
Pyruvate dehydrogenase E1 component beta subunit.
    
 0.506
Your Current Organism:
Limimonas halophila
NCBI taxonomy Id: 1082479
Other names: DSM 25584, IBRC-M 10018, L. halophila, Limimonas halophila Amoozegar et al. 2013, Rhodospirillaceae bacterium Ia16, strain IA16
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