STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDG41126.1MurNAc alpha-1-phosphate uridylyltransferase. (240 aa)    
Predicted Functional Partners:
SDG41148.1
Hypothetical protein.
 
 0.999
SDG41181.1
tRNA threonylcarbamoyladenosine biosynthesis protein TsaE.
    
  0.909
SDG41097.1
ATP-dependent helicase/nuclease subunit B.
       0.841
murB
UDP-N-acetylmuramate dehydrogenase; Cell wall formation.
 
  
  0.838
SDF76604.1
dTDP-glucose 4,6-dehydratase; Belongs to the NAD(P)-dependent epimerase/dehydratase family. dTDP-glucose dehydratase subfamily.
  
 
 0.831
murA
UDP-N-acetylglucosamine 1-carboxyvinyltransferase; Cell wall formation. Adds enolpyruvyl to UDP-N- acetylglucosamine; Belongs to the EPSP synthase family. MurA subfamily.
    
 0.818
SDF75028.1
Mannose-6-phosphate isomerase, type 2.
  
 
 0.788
SDG17456.1
Mannose-1-phosphate guanylyltransferase / mannose-6-phosphate isomerase; Belongs to the mannose-6-phosphate isomerase type 2 family.
  
 
 0.788
SDF76625.1
Glucose-1-phosphate thymidylyltransferase.
 
 
0.767
SDF75729.1
Phosphomannomutase.
 
 
 0.725
Your Current Organism:
Limimonas halophila
NCBI taxonomy Id: 1082479
Other names: DSM 25584, IBRC-M 10018, L. halophila, Limimonas halophila Amoozegar et al. 2013, Rhodospirillaceae bacterium Ia16, strain IA16
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