STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDG43116.1Isocitrate lyase. (432 aa)    
Predicted Functional Partners:
glcB
Malate synthase; Involved in the glycolate utilization. Catalyzes the condensation and subsequent hydrolysis of acetyl-coenzyme A (acetyl- CoA) and glyoxylate to form malate and CoA; Belongs to the malate synthase family. GlcB subfamily.
 
 
 0.997
SDG48868.1
Malate dehydrogenase (oxaloacetate-decarboxylating)(NADP+); Belongs to the malic enzymes family.
   
 
 0.977
SDG11238.1
Aconitate hydratase; Catalyzes the isomerization of citrate to isocitrate via cis- aconitate.
   
 
 0.924
SDF41205.1
Glyoxylate/hydroxypyruvate reductase A.
   
 
 0.808
SDG07866.1
Glycolate oxidase iron-sulfur subunit.
     
 0.803
SDG41477.1
Glyoxylate reductase; Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family.
     
 0.792
SDF70764.1
Citrate synthase; Belongs to the citrate synthase family.
   
 
 0.709
mdh
Malate dehydrogenase (NAD); Catalyzes the reversible oxidation of malate to oxaloacetate. Belongs to the LDH/MDH superfamily. MDH type 3 family.
   
 
 0.590
SDF82110.1
Glyoxylate reductase; Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family.
     
 0.585
SDG08978.1
beta-methylmalyl-CoA/L-malyl-CoA lyase; Belongs to the HpcH/HpaI aldolase family.
     
 0.549
Your Current Organism:
Limimonas halophila
NCBI taxonomy Id: 1082479
Other names: DSM 25584, IBRC-M 10018, L. halophila, Limimonas halophila Amoozegar et al. 2013, Rhodospirillaceae bacterium Ia16, strain IA16
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