STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDG53311.1Hypothetical protein. (274 aa)    
Predicted Functional Partners:
SDG53425.1
Bacteriophage head to tail connecting protein.
 
     0.894
SDG53259.1
Hypothetical protein.
 
     0.886
SDG53232.1
Hypothetical protein.
 
     0.876
SDG53127.1
Hypothetical protein.
 
     0.847
SDG53283.1
Hypothetical protein.
       0.822
SDG53175.1
Hypothetical protein.
 
     0.812
SDG53537.1
Phage repressor protein C, contains Cro/C1-type HTH and peptisase s24 domains; Belongs to the peptidase S24 family.
 
     0.714
SDG34738.1
Hypothetical protein.
  
     0.700
SDF57274.1
23S rRNA (cytidine2498-2'-O)-methyltransferase.
  
     0.667
SDG44583.1
Predicted protein tyrosine phosphatase.
  
     0.628
Your Current Organism:
Limimonas halophila
NCBI taxonomy Id: 1082479
Other names: DSM 25584, IBRC-M 10018, L. halophila, Limimonas halophila Amoozegar et al. 2013, Rhodospirillaceae bacterium Ia16, strain IA16
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.