STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDG56221.1Fe-S cluster biogenesis protein NfuA, 4Fe-4S-binding domain. (304 aa)    
Predicted Functional Partners:
hemC
Hydroxymethylbilane synthase; Tetrapolymerization of the monopyrrole PBG into the hydroxymethylbilane pre-uroporphyrinogen in several discrete steps.
 
      0.848
SDG10078.1
Succinate dehydrogenase subunit B; Belongs to the succinate dehydrogenase/fumarate reductase iron-sulfur protein family.
  
 
 0.722
nuoI
NADH dehydrogenase subunit I; NDH-1 shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient.
   
  
 0.687
SDF68772.1
Iron-sulfur cluster assembly protein; Belongs to the HesB/IscA family.
 
 
 0.678
SDG00447.1
Cysteine desulfurase IscS.
 
 
 0.649
SDF72946.1
Iron-sulfur cluster insertion protein; Belongs to the HesB/IscA family.
 
 
 0.634
SDF68840.1
Nitrogen fixation protein NifU.
  
 
 0.611
ilvD
Dihydroxy-acid dehydratase; Belongs to the IlvD/Edd family.
  
 
 0.602
SDG00475.1
Cysteine desulfurase.
  
 
 0.593
SDG56250.1
Hypothetical protein.
       0.479
Your Current Organism:
Limimonas halophila
NCBI taxonomy Id: 1082479
Other names: DSM 25584, IBRC-M 10018, L. halophila, Limimonas halophila Amoozegar et al. 2013, Rhodospirillaceae bacterium Ia16, strain IA16
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.