STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
trmJtRNA:Cm32/Um32 methyltransferase; Catalyzes the formation of 2'O-methylated cytidine (Cm32) or 2'O-methylated uridine (Um32) at position 32 in tRNA. (267 aa)    
Predicted Functional Partners:
KKY_1835
Putative acetyltransferase.
       0.774
cysS
cysteinyl-tRNA synthetase; Belongs to the class-I aminoacyl-tRNA synthetase family.
      0.707
KKY_1941
Nicotinamidase.
 
      0.631
KKY_1838
Hypothetical protein.
  
    0.588
rlmE
Cell division protein FtsJ / ribosomal RNA large subunit methyltransferase J; Specifically methylates the uridine in position 2552 of 23S rRNA at the 2'-O position of the ribose in the fully assembled 50S ribosomal subunit.
  
   
 0.582
KKY_1833
Membrane protein, putative.
       0.561
KKY_1333
Lipoprotein releasing system transmembrane protein LolC.
  
    0.552
KKY_1836
Hypothetical protein.
       0.545
KKY_1837
Gfa-like protein.
       0.545
rnhB
Ribonuclease HII; Endonuclease that specifically degrades the RNA of RNA-DNA hybrids.
 
  
 0.541
Your Current Organism:
Pelagibacterium halotolerans
NCBI taxonomy Id: 1082931
Other names: Devosia sp. B2, Hyphomicrobiaceae bacterium B2, P. halotolerans B2, Pelagibacterium halotolerans B2, Pelagibacterium halotolerans CGMCC 1.7692
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.