STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KKY_2257Pyrimidine ABC transporter, transmembrane component 2. (288 aa)    
Predicted Functional Partners:
KKY_2259
Pyrimidine ABC transporter, ATP-binding protein.
    0.959
KKY_2256
Pyrimidine ABC transporter, substrate-binding component.
 
    0.925
KKY_2258
Pyrimidine ABC transporter, transmembrane component 1.
 
    
0.856
KKY_856
GGDEF domain protein.
 
    0.824
KKY_2622
Twin-arginine translocation pathway signal.
 
    0.809
KKY_855
Pyrimidine ABC transporter, ATP-binding protein.
    0.800
KKY_2142
ABC transporter, periplasmic binding protein.
 
    0.786
KKY_819
Hypothetical protein.
 
    0.784
KKY_2260
Dihydropyrimidinase.
 
     0.766
KKY_2144
Taurine transport ATP-binding protein TauB.
    0.709
Your Current Organism:
Pelagibacterium halotolerans
NCBI taxonomy Id: 1082931
Other names: Devosia sp. B2, Hyphomicrobiaceae bacterium B2, P. halotolerans B2, Pelagibacterium halotolerans B2, Pelagibacterium halotolerans CGMCC 1.7692
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