STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KKY_2994DNA-3-methyladenine glycosylase II; HhH-GPD base excision DNA repair family protein, probable 3-methyladenine DNA glycosylase/8-oxoguanine DNA glycosylase. (219 aa)    
Predicted Functional Partners:
KKY_2995
Phospholipase/carboxylesterase family protein.
    
 0.856
KKY_3109
ADA regulatory protein / methylated-DNA--protein-cysteine methyltransferase.
 
  
 0.815
KKY_1484
Exodeoxyribonuclease III.
  
 0.649
KKY_2993
glutamyl-Q-tRNA synthetase; Belongs to the class-I aminoacyl-tRNA synthetase family.
       0.649
KKY_3317
Exodeoxyribonuclease III.
  
 0.649
polA
DNA polymerase I; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity; Belongs to the DNA polymerase type-A family.
   
 
 0.598
KKY_3357
ADA regulatory protein / methylated-DNA--protein-cysteine methyltransferase.
  
  
 0.562
KKY_2996
HNH endonuclease family protein.
       0.527
dinB
DNA polymerase IV; Poorly processive, error-prone DNA polymerase involved in untargeted mutagenesis. Copies undamaged DNA at stalled replication forks, which arise in vivo from mismatched or misaligned primer ends. These misaligned primers can be extended by PolIV. Exhibits no 3'-5' exonuclease (proofreading) activity. May be involved in translesional synthesis, in conjunction with the beta clamp from PolIII.
 
 
 0.487
recA
RecA protein; Can catalyze the hydrolysis of ATP in the presence of single- stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybridization of homologous single-stranded DNAs. It interacts with LexA causing its activation and leading to its autocatalytic cleavage; Belongs to the RecA family.
    
 
 0.480
Your Current Organism:
Pelagibacterium halotolerans
NCBI taxonomy Id: 1082931
Other names: Devosia sp. B2, Hyphomicrobiaceae bacterium B2, P. halotolerans B2, Pelagibacterium halotolerans B2, Pelagibacterium halotolerans CGMCC 1.7692
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