STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KKY_802RNA polymerase sigma-70 factor, ECF subfamily. (419 aa)    
Predicted Functional Partners:
KKY_803
RNA polymerase sigma-70 factor, ECF subfamily.
 
     0.950
KKY_2184
Hypothetical protein.
 
     0.789
KKY_3449
PhnB protein.
 
     0.788
KKY_649
Putative glutathione S-transferase-related transmembrane protein.
      0.603
KKY_801
Putative hydrolase, alpha/beta fold family protein.
       0.574
KKY_804
Hypothetical protein.
       0.501
KKY_800
PhnB protein, putative DNA binding 3-demethylubiquinone-9 3-methyltransferase domain protein.
       0.430
Your Current Organism:
Pelagibacterium halotolerans
NCBI taxonomy Id: 1082931
Other names: Devosia sp. B2, Hyphomicrobiaceae bacterium B2, P. halotolerans B2, Pelagibacterium halotolerans B2, Pelagibacterium halotolerans CGMCC 1.7692
Server load: low (24%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.