STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KKY_836TRAP-type C4-dicarboxylate transport system, large permease component. (429 aa)    
Predicted Functional Partners:
KKY_838
TRAP-type C4-dicarboxylate transport system, periplasmic component.
 
    0.930
KKY_2577
TRAP-type C4-dicarboxylate transport system, periplasmic component.
    0.850
KKY_837
Hypothetical protein.
  
   0.829
KKY_2670
TRAP-type C4-dicarboxylate transport system, periplasmic component.
 
    0.828
KKY_2669
Tripartite ATP-independent periplasmic transporter, DctQ component.
  
   0.817
KKY_2674
TRAP-type C4-dicarboxylate transport system, periplasmic component.
    0.817
KKY_2681
TRAP-type C4-dicarboxylate transport system, periplasmic component.
 
    0.801
KKY_3840
TRAP transporter solute receptor, unknown substrate 3.
 
    0.778
KKY_248
TRAP-type C4-dicarboxylate transport system, periplasmic component.
 
    0.767
KKY_194
TRAP-type C4-dicarboxylate transport system, periplasmic component.
 
    0.754
Your Current Organism:
Pelagibacterium halotolerans
NCBI taxonomy Id: 1082931
Other names: Devosia sp. B2, Hyphomicrobiaceae bacterium B2, P. halotolerans B2, Pelagibacterium halotolerans B2, Pelagibacterium halotolerans CGMCC 1.7692
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.