STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KKY_838TRAP-type C4-dicarboxylate transport system, periplasmic component. (331 aa)    
Predicted Functional Partners:
KKY_836
TRAP-type C4-dicarboxylate transport system, large permease component.
 
    0.930
KKY_2669
Tripartite ATP-independent periplasmic transporter, DctQ component.
  
    0.801
KKY_2668
TRAP-type C4-dicarboxylate transport system, large permease component.
 
    0.785
KKY_2672
TRAP-type C4-dicarboxylate transport system, large permease component.
 
    0.785
KKY_2682
TRAP-type C4-dicarboxylate transport system, large permease component.
 
    0.785
KKY_2576
TRAP-type C4-dicarboxylate transport system, large permease component.
 
    0.784
KKY_196
TRAP-type C4-dicarboxylate transport system, large permease component.
 
    0.781
KKY_2384
TRAP dicarboxylate transporter, DctM subunit, unknown substrate 7.
 
    0.758
KKY_3842
TRAP dicarboxylate transporter, DctM subunit, unknown substrate 3.
 
    0.743
KKY_837
Hypothetical protein.
  
    0.732
Your Current Organism:
Pelagibacterium halotolerans
NCBI taxonomy Id: 1082931
Other names: Devosia sp. B2, Hyphomicrobiaceae bacterium B2, P. halotolerans B2, Pelagibacterium halotolerans B2, Pelagibacterium halotolerans CGMCC 1.7692
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.