STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
GNIT_0360Type II secretion system protein E:GAF domain protein. (744 aa)    
Predicted Functional Partners:
mshG
Type II secretion system protein.
 
 
 0.926
pilC
Type IV pilus biogenesis protein PilC.
 
 
 0.926
gspF
Type II secretion system protein.
 
 
 0.926
gspF-2
General secretion pathway protein F.
 
 
 0.926
pilD
Prepilin peptidase; Cleaves type-4 fimbrial leader sequence and methylates the N- terminal (generally Phe) residue.
 
 
 0.868
gspL
General secretion pathway protein L; Involved in a type II secretion system (T2SS, formerly general secretion pathway, GSP) for the export of proteins.
  
 
 0.804
GNIT_3298
Sensory transduction histidine kinase.
   
 
 0.733
comEC
DNA internalization-related competence protein ComEC/Rec2.
 
  
 0.684
GNIT_3241
PAS sensor diguanylate cyclase/phosphodiesterase.
  
 
 0.680
pilM
Putative Type IV pilus biogenesis protein PilM.
 
 
 
 0.636
Your Current Organism:
Glaciecola nitratireducens
NCBI taxonomy Id: 1085623
Other names: G. nitratireducens FR1064, Glaciecola nitratireducens FR1064, Glaciecola nitratireducens str. FR1064, Glaciecola nitratireducens strain FR1064, Glaciecola sp. FR1064
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