STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
GNIT_0517PAS sensor protein. (1435 aa)    
Predicted Functional Partners:
cheA
CheA signal transduction histidine kinase.
 
 0.997
GNIT_0864
HD-GYP domain protein.
  
 
 0.996
cheA-2
Chemotaxis protein cheA.
  
 0.996
cheV
Chemotaxis protein CheV.
  
 
 0.993
GNIT_0905
Sensor histidine kinase with multiple PAS/PAC and a response regulator receiver domain.
 
 
 0.993
cheV-2
Chemotaxis protein CheV.
  
 
 0.993
GNIT_1305
Multi-sensor hybrid histidine kinase.
 
 
 0.993
cheV-3
Response regulator receiver modulated CheW protein.
  
 
 0.993
GNIT_3298
Sensory transduction histidine kinase.
  
 
 0.993
GNIT_0568
Multi-sensor hybrid histidine kinase.
 
 0.992
Your Current Organism:
Glaciecola nitratireducens
NCBI taxonomy Id: 1085623
Other names: G. nitratireducens FR1064, Glaciecola nitratireducens FR1064, Glaciecola nitratireducens str. FR1064, Glaciecola nitratireducens strain FR1064, Glaciecola sp. FR1064
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