STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
GNIT_3653Hypothetical protein. (396 aa)    
Predicted Functional Partners:
GNIT_3652
Hypothetical protein.
 
     0.955
GNIT_3654
Putative lipoprotein.
 
     0.955
GNIT_3656
Hypothetical protein.
 
   
 0.951
GNIT_3650
TPR repeat domain protein.
 
     0.949
GNIT_3651
Hypothetical protein.
 
     0.946
GNIT_3649
Tetratricopeptide repeat protein.
 
     0.921
GNIT_3655
Redoxin domain protein.
 
     0.892
GNIT_3658
Hypothetical protein.
 
     0.883
GNIT_3657
Hypothetical protein.
 
     0.881
GNIT_3646
Hypothetical protein.
 
     0.853
Your Current Organism:
Glaciecola nitratireducens
NCBI taxonomy Id: 1085623
Other names: G. nitratireducens FR1064, Glaciecola nitratireducens FR1064, Glaciecola nitratireducens str. FR1064, Glaciecola nitratireducens strain FR1064, Glaciecola sp. FR1064
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.