STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
GCA_002093975_00344Unannotated protein. (117 aa)    
Predicted Functional Partners:
GCA_002093975_01690
Unannotated protein.
 
 
 0.964
GCA_002093975_00538
Unannotated protein.
  
 0.908
GCA_002093975_00345
Unannotated protein.
  
 
 0.890
GCA_002093975_04743
Unannotated protein.
  
 
 0.875
GCA_002093975_02480
Unannotated protein.
  
 
 0.853
GCA_002093975_01931
Unannotated protein.
    
 0.843
GCA_002093975_01932
Unannotated protein.
    
  0.842
GCA_002093975_01935
Unannotated protein.
    
  0.842
GCA_002093975_01929
Unannotated protein.
    
  0.841
GCA_002093975_02628
Unannotated protein.
  
 
 0.801
Your Current Organism:
Thermoactinospora rubra
NCBI taxonomy Id: 1088767
Other names: CCTCC AA 2011014, DSM 45614, Streptosporangiaceae bacterium YIM 77501, Streptosporangiaceae bacterium YIM 77570, T. rubra, Thermoactinospora rubra Zhou et al. 2012, YIM 77501
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.