STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
GCA_002093975_03813Unannotated protein. (286 aa)    
Predicted Functional Partners:
GCA_002093975_00733
Unannotated protein.
  
     0.709
GCA_002093975_06570
Unannotated protein.
    
  0.676
GCA_002093975_02296
Unannotated protein.
  
 
 0.643
GCA_002093975_07152
Unannotated protein.
  
     0.643
GCA_002093975_04110
Unannotated protein.
  
     0.618
GCA_002093975_01123
Unannotated protein.
  
     0.611
GCA_002093975_07153
Unannotated protein.
 
 
 0.592
GCA_002093975_04859
Unannotated protein.
  
 
  0.564
GCA_002093975_04111
Unannotated protein.
 
 
 0.556
GCA_002093975_01121
Unannotated protein.
  
 
  0.554
Your Current Organism:
Thermoactinospora rubra
NCBI taxonomy Id: 1088767
Other names: CCTCC AA 2011014, DSM 45614, Streptosporangiaceae bacterium YIM 77501, Streptosporangiaceae bacterium YIM 77570, T. rubra, Thermoactinospora rubra Zhou et al. 2012, YIM 77501
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.