STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CIN_13310Hypothetical protein. (228 aa)    
Predicted Functional Partners:
CIN_13270
Biopolymer transport protein exbD1.
 
   0.889
CIN_13290
exbB/TolQ/MotA.
 
   0.881
CIN_13280
exbD/TolR.
 
   0.825
CIN_13110
tonB-dependent receptor.
 
   0.795
CIN_14740
Pyruvate:ferredoxin oxidoreductase.
    
  0.719
CIN_16520
Pyruvate flavodoxin/ferredoxin oxidoreductase domain protein.
    
  0.719
CIN_13300
Hypothetical protein.
      
0.701
CIN_18550
Hypothetical protein.
    
 
 0.676
CIN_10250
Outer membrane siderophore receptor.
  
   0.599
prfB
Peptide chain release factor 2; Peptide chain release factor 2 directs the termination of translation in response to the peptide chain termination codons UGA and UAA.
  
    0.594
Your Current Organism:
Commensalibacter intestini
NCBI taxonomy Id: 1088868
Other names: Acetobacteraceae bacterium A911, C. intestini A911, Commensalibacter intestini A911, Commensalibacter intestini JCM 15511, Commensalibacter intestini KCTC 22117, Commensalibacter intestini str. A911, Commensalibacter intestini strain A911
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.