STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CIN_16620Hypothetical protein. (560 aa)    
Predicted Functional Partners:
CIN_10590
Outer membrane protein.
  
 
 
 0.727
CIN_13110
tonB-dependent receptor.
  
     0.717
CIN_20670
Hypothetical protein.
  
     0.705
CIN_18440
Hypothetical protein.
  
     0.671
CIN_00020
Hypothetical protein.
  
     0.638
CIN_05740
Hypothetical protein.
  
     0.626
CIN_11870
Putative glycosyltransferase.
  
     0.618
CIN_11880
Putative glycosyltransferase.
  
    0.616
CIN_05320
Hypothetical protein.
  
 
   0.595
CIN_18250
Hypothetical protein.
  
    0.592
Your Current Organism:
Commensalibacter intestini
NCBI taxonomy Id: 1088868
Other names: Acetobacteraceae bacterium A911, C. intestini A911, Commensalibacter intestini A911, Commensalibacter intestini JCM 15511, Commensalibacter intestini KCTC 22117, Commensalibacter intestini str. A911, Commensalibacter intestini strain A911
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