STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
xylAXylose isomerase; Belongs to the xylose isomerase family. (439 aa)    
Predicted Functional Partners:
xylB
Xylulokinase.
 
 
 0.944
CIN_19250
AraC family transcriptional regulator.
 
   
 0.787
CIN_15760
Mannitol dehydrogenase domain-containing protein.
     
 0.729
CIN_21060
Hypothetical protein.
     
 0.713
CIN_18930
Glucokinase; Belongs to the bacterial glucokinase family.
     
 0.593
CIN_19260
Sugar porter family MFS transporter; Belongs to the major facilitator superfamily. Sugar transporter (TC 2.A.1.1) family.
       0.541
CIN_14200
Xylulokinase; Belongs to the FGGY kinase family.
  
 
 0.534
CIN_07290
Hypothetical protein; Belongs to the glycosyl hydrolase 1 family.
    
 0.533
CIN_07350
Putative 4-hydroxyphenylpyruvate dioxygenase.
    
 0.527
CIN_14880
Zinc-binding dehydrogenase.
     
 0.524
Your Current Organism:
Commensalibacter intestini
NCBI taxonomy Id: 1088868
Other names: Acetobacteraceae bacterium A911, C. intestini A911, Commensalibacter intestini A911, Commensalibacter intestini JCM 15511, Commensalibacter intestini KCTC 22117, Commensalibacter intestini str. A911, Commensalibacter intestini strain A911
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.