STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CIN_19330Biopolymer transport protein ExbB. (239 aa)    
Predicted Functional Partners:
CIN_19320
exbD/TolR.
 
 
 0.984
CIN_19310
Hypothetical protein.
 
 
 0.921
CIN_05040
Putative biopolymer transport protein.
 
 
 0.915
CIN_13280
exbD/TolR.
 
 
 0.905
pal
Outer membrane lipoprotein Omp16; Part of the Tol-Pal system, which plays a role in outer membrane invagination during cell division and is important for maintaining outer membrane integrity.
 
   
 0.654
tolB
Translocation protein TolB; Part of the Tol-Pal system, which plays a role in outer membrane invagination during cell division and is important for maintaining outer membrane integrity.
 
  
 0.615
CIN_13270
Biopolymer transport protein exbD1.
  
 
 0.608
CIN_19340
Hypothetical protein.
 
     0.578
CIN_05050
Hypothetical protein.
  
   0.550
CIN_13310
Hypothetical protein.
   
   0.524
Your Current Organism:
Commensalibacter intestini
NCBI taxonomy Id: 1088868
Other names: Acetobacteraceae bacterium A911, C. intestini A911, Commensalibacter intestini A911, Commensalibacter intestini JCM 15511, Commensalibacter intestini KCTC 22117, Commensalibacter intestini str. A911, Commensalibacter intestini strain A911
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.