STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
GCA_000383915_04827Unannotated protein. (101 aa)    
Predicted Functional Partners:
GCA_000383915_04828
Unannotated protein.
 
     0.940
GCA_000383915_04826
Unannotated protein.
       0.784
GCA_000383915_04825
Unannotated protein.
       0.773
GCA_000383915_04795
Unannotated protein.
  
     0.768
GCA_000383915_02109
Unannotated protein.
  
     0.767
GCA_000383915_04829
Unannotated protein.
 
     0.753
GCA_000383915_04830
Unannotated protein.
       0.722
GCA_000383915_04831
Unannotated protein.
 
     0.474
Your Current Organism:
Amycolatopsis benzoatilytica
NCBI taxonomy Id: 1089544
Other names: A. benzoatilytica AK 16/65, Amycolatopsis benzoatilytica AK 16/65, Amycolatopsis benzoatilytica DSM 43387, Amycolatopsis benzoatilytica str. AK 16/65, Amycolatopsis benzoatilytica strain AK 16/65
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.